Learning a low dimensional manifold of real cancer tissue with PathologyGAN

Quiros et al. 2020. NeurIPS LMRL Workshop.

Inferring structural variant cancer cell fraction

Cmero and Yuan et al. 2020. Nature Communications.

The evolutionary history of 2,658 cancers

Gerstung et al. 2020. Nature.

Pathology GAN: Learning deep representations of cancer tissue

Quiros et al. 2020. MIDL.

FrenchFISH: Poisson models for quantifying DNA copy-number from fluorescence in situ hybridisation of tissue sections

Macintyre et al. 2018. bioRxiv.

Ccube: A fast and robust method for estimating cancer cell fractions

Yuan et al. 2018. bioRxiv

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Dentro et al. 2018. bioRxiv.

Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma

Dong et al. 2018. Journal of Hepatology.

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

de Santiago et al. 2017. Genome Biology.

A phylogenetic latent feature model for clonal deconvolution

Marass et al. 2016. Ann. Appl. Stat.

SVclone: inferring structural variant cancer cell fraction

Cmero et al. 2017. bioRxiv.

BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies

Yuan et al. 2015. Genome Biology.

Joining the dots: Network analysis of gene perturbation data

Wang et al. 2015. Systems Genetics: Linking Genotypes and Phenotypes.

Reconstructing evolving signalling networks by hidden Markov nested effects models

Wang and Yuan et al. 2017. Ann. Appl. Stat.

Markov Chain Monte Carlo Methods for State-Space Models with Point Process Observations

Yuan et al. 2012. Neural Computation.

Online Variational Inference for State-Space Models with Point-Process Observations

Zammit Mangion and Yuan et al. 2011. Neural Computation.

Estimating a State-Space Model from Point Process Observations: A Note on Convergence

Yuan and Niranjan 2010. Neural Computation.

Reliability-Aided Multiuser Detection in Time-Frequency-Domain Spread Multicarrier DS-CDMA Systems

Yuan et al. 2009. VTC.