Ke Yuan

Google Scholar

I’m a Lecturer in Machine Learning and Computational Biology at the School of Computing Science in the Information, Data and Analysis Section and the Information, Dynamics and Interaction. I’m also an affiliate member of the Institute of Cancer Sciences at the University of Glasgow.

Prior to Glasgow, I received a PhD from the University of Southampton in 2013 advised by Prof Mahesan Niranjan. Till 04/2016, I was a postdoctoral research fellow at Cancer Research UK Cambridge Institute at the University of Cambridge working with Dr Florian Markowetz.


Learning a low dimensional manifold of real cancer tissue with PathologyGAN

Inferring structural variant cancer cell fraction

The evolutionary history of 2,658 cancers

Pathology GAN: Learning deep representations of cancer tissue

FrenchFISH: Poisson models for quantifying DNA copy-number from fluorescence in situ hybridisation of tissue sections

Ccube: A fast and robust method for estimating cancer cell fractions

Portraits of genetic intra-tumour heterogeneity and subclonal selection across cancer types

Spatial and temporal clonal evolution of intrahepatic cholangiocarcinoma

BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes

A phylogenetic latent feature model for clonal deconvolution

SVclone: inferring structural variant cancer cell fraction

BitPhylogeny: a probabilistic framework for reconstructing intra-tumor phylogenies

Joining the dots: Network analysis of gene perturbation data

Reconstructing evolving signalling networks by hidden Markov nested effects models

Markov Chain Monte Carlo Methods for State-Space Models with Point Process Observations

Online Variational Inference for State-Space Models with Point-Process Observations

Estimating a State-Space Model from Point Process Observations: A Note on Convergence

Reliability-Aided Multiuser Detection in Time-Frequency-Domain Spread Multicarrier DS-CDMA Systems


ccube - Bayesian mixture models for estimating and clustering cancer cell fractions

docker-ccube -

docker-pyclone -

bitphyloR - BitPhylogeny in R